CDS

Accession Number TCMCG051C29355
gbkey CDS
Protein Id XP_002314343.2
Location join(428115..428343,428570..428985,429351..429545,431009..431196,432724..432937,433167..433298,433387..433565,433765..434002)
Gene LOC7496495
GeneID 7496495
Organism Populus trichocarpa

Protein

Length 596aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA17973
db_source XM_002314307.3
Definition DEAD-box ATP-dependent RNA helicase 50 [Populus trichocarpa]

EGGNOG-MAPPER Annotation

COG_category A
Description DEAD-box ATP-dependent RNA helicase
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03009        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
KEGG_ko ko:K13179        [VIEW IN KEGG]
EC 3.6.4.13        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs GO:0001101        [VIEW IN EMBL-EBI]
GO:0002376        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003724        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004004        [VIEW IN EMBL-EBI]
GO:0004386        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006952        [VIEW IN EMBL-EBI]
GO:0006955        [VIEW IN EMBL-EBI]
GO:0006968        [VIEW IN EMBL-EBI]
GO:0008026        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008186        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009607        [VIEW IN EMBL-EBI]
GO:0009620        [VIEW IN EMBL-EBI]
GO:0009719        [VIEW IN EMBL-EBI]
GO:0009723        [VIEW IN EMBL-EBI]
GO:0009725        [VIEW IN EMBL-EBI]
GO:0009751        [VIEW IN EMBL-EBI]
GO:0009753        [VIEW IN EMBL-EBI]
GO:0009814        [VIEW IN EMBL-EBI]
GO:0009817        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010501        [VIEW IN EMBL-EBI]
GO:0014070        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016462        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016817        [VIEW IN EMBL-EBI]
GO:0016818        [VIEW IN EMBL-EBI]
GO:0016887        [VIEW IN EMBL-EBI]
GO:0017111        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032870        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0035690        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0042493        [VIEW IN EMBL-EBI]
GO:0042623        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043207        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045087        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046677        [VIEW IN EMBL-EBI]
GO:0050832        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051707        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070035        [VIEW IN EMBL-EBI]
GO:0070887        [VIEW IN EMBL-EBI]
GO:0071229        [VIEW IN EMBL-EBI]
GO:0071236        [VIEW IN EMBL-EBI]
GO:0071310        [VIEW IN EMBL-EBI]
GO:0071369        [VIEW IN EMBL-EBI]
GO:0071395        [VIEW IN EMBL-EBI]
GO:0071407        [VIEW IN EMBL-EBI]
GO:0071446        [VIEW IN EMBL-EBI]
GO:0071495        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0098542        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901700        [VIEW IN EMBL-EBI]
GO:1901701        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCACATCCTCTTCTTGTAAGCTTGAGACCCCAAAGCATTATCATCGCCTATCACAGCCACAGCCACAGCCACATTGAATTGAAATTGAATAGTAGCAGTCCTAGGGTTTTGTCTTTGGTTAGAGCTGTCCCTCACCTTCAAGCCTCTGCTTCTCACTCTCACCTTCTCGATGATCTTCATCACACTCCTTCTCCTCCTTCTCCTCCTTCAAATAAGGATGATTCAGGTATTGAAACTAAGGGAGTAGCTGCAAATTTTGGGAAACTAAAAGCACACAAGTTAAAACTTATTGCCAGAAAGGCAAAGCAACAATTCAACAAACACCAACATTTTCGAGAAGAGGAGGAGGAGGCAGATAAAGAGCCCATCAGTAGGAATTCAGACGAGCGTGGTGTTAATAGGACATCAAGGCATGATATCAAACCTCGAAAATCCGATTCCAAAGTGGCTGGAACACATATTTCTTCTTCCCACTCAAGAGGTTGGGGTAAAGGAGTCGACTCCAGATCAATGCAGGTTTCTATGCAACGAGGATATGAGAATGACTTCTTTAGTAGAAAATCATTTAGAGACCTGGGATGCACTGACTTTATGATTGAGTCTTTAAAAGGGCAGGTTTTTGTGCGCCCTTCTCATATTCAGGCCATGGCATTTGCACCTGTAATTGACGGGAAGAGCTGTATTATAGCAGACCAAAGTGGATCAGGGAAGACAATGGCATATCTCATACCTTTAATTCAACGTCTGAGGCAAGAAGAACTCCAAGGACTTGGTCAATCCTCATCTCAAAGTCCTCGAGTACTTATATTGGTGCCAACTGCTGAGTTGGCATCACAGGTTTTGAACAATTGCAGATCGATGTCAAAACACGGGGTTCCATTTCGGTCTATGGTTGTGACAGGTGGATTTCGACAGAGGACACAACTGGAAAATCTAGAACAAGGCGTTGATGTTCTAATAGCAACCCCTGGTCGTTTCATGTTCCTAATCAAAGAAGGCTTCTTGAAATTACAGAATCTTAAATGTGCTGTGCTAGATGAGATAGATATACTGTTCAATGACGAGAATTTTGAGGCTTCCCTGCAAGGCTTGATCAATTCTTCTCCTGTTACCACACAATATCTGTTTGTGACTGCAACTTTACCTGTAGATGTATGCAATAAACTCATTGAAGTCTTTCCTGATTGTGAAGTCATCATGGGACCTGGTGTGCATCGTACAAGTGCCAGGCTTGAAGAGATTCTAGTAGATTGCAGTGGAGAAATTGAGGCAGAAAAAACTCCTGAGACAGCATTTCTCAATAAGAAATCTGCTCTTCTGCAGCTGGTGGAGCAAAGTCCAGTTTCGAAAACAATTATTTTCTGTAATAAGATTGAGACTTGCAGAAAGGTAGAGAATGCATTAAAACGTACTGATAGAAAAGGGACTCTTGTTCGAGTTCTACCATTCCATGCTGCTCTGGCACAAGAATCACGTCTCGCAAATATGAAGGAGTTCATGAATCCTTCTCGGCCCAAAGAAGAGTCTCTCTTTTTGGTTTGCACTGATAGAGCATCGCGGGGAATTGACTTTTCTGGTGTGGATCATGTGGTACTCTTTGACTTTCCACGTGATCCAAGTGAATATGTGCGCCGTGTTGGAAGGACTGCCAGGGGTGCCAGAGGAAACGGGAAAGCTTTTATCTTTGCTGTTGGGAAGCAAGTTTTTCTTGCACGAAAGATAATACAGAGAAATGAAAAAGGTCACCCGTTGCATGATGTGCCATTTGCGTATGAGCAGGTGGGTTAA
Protein:  
MAHPLLVSLRPQSIIIAYHSHSHSHIELKLNSSSPRVLSLVRAVPHLQASASHSHLLDDLHHTPSPPSPPSNKDDSGIETKGVAANFGKLKAHKLKLIARKAKQQFNKHQHFREEEEEADKEPISRNSDERGVNRTSRHDIKPRKSDSKVAGTHISSSHSRGWGKGVDSRSMQVSMQRGYENDFFSRKSFRDLGCTDFMIESLKGQVFVRPSHIQAMAFAPVIDGKSCIIADQSGSGKTMAYLIPLIQRLRQEELQGLGQSSSQSPRVLILVPTAELASQVLNNCRSMSKHGVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPGRFMFLIKEGFLKLQNLKCAVLDEIDILFNDENFEASLQGLINSSPVTTQYLFVTATLPVDVCNKLIEVFPDCEVIMGPGVHRTSARLEEILVDCSGEIEAEKTPETAFLNKKSALLQLVEQSPVSKTIIFCNKIETCRKVENALKRTDRKGTLVRVLPFHAALAQESRLANMKEFMNPSRPKEESLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARGARGNGKAFIFAVGKQVFLARKIIQRNEKGHPLHDVPFAYEQVG